API

Import scatlastb_utils as:

import scatlastb_utils as sa

Modules

• Reading and Writing: io
  • Reading
  • Writing
• Preprocessing: pp
  • scatlastb_utils.pp.strip_barcodes
  • scatlastb_utils.pp.find_library_obs
  • scatlastb_utils.pp.pseudobulk
• Tools: tl
  • scatlastb_utils.tl.majority_reference
• Plotting: pl
  • scatlastb_utils.pl.qc_joint
  • scatlastb_utils.pl.embedding
• Metrics: me
  • Graph distance comparison
  • KNN overlap metric
• Pipeline Configuration: pipeline
  • scatlastb_utils.pipeline.PipelineConfig
  • scatlastb_utils.pipeline.ModuleConfig.ModuleConfig
  • scatlastb_utils.pipeline.ModuleConfig.WildcardParameters
  • scatlastb_utils.pipeline.ModuleConfig.InputFiles