scatlastb_utils.pp.strip_barcodes

Contents

scatlastb_utils.pp.strip_barcodes#

scatlastb_utils.pp.strip_barcodes(obs_names, re_pattern='[ACTG]{16}')#

Retrieve clean barcodes.

Strip a list of cell names (e.g. from .obs_names of an object) to just the cell barcodes.

Parameters:

  • obs_names – A list of cell names to strip down to just barcodes.

  • re_pattern (default: '[ACTG]{16}') – The pattern to re.search() for, the "[ACTG]{16}" default matches 16bp 10X barcodes.

Returns:

A list of the input cell names, stripped down to just the cell barcode.

Contents