scatlastb_utils.metrics.knn_overlap

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scatlastb_utils.metrics.knn_overlap#

scatlastb_utils.metrics.knn_overlap(adata, obsp_keys, operator='intersection', use_dask=True, chunk_size=50000, power_k=1, _lambda=1, weighted=False, log_scale=False, max_scale=False, scale='min')#

kNN-based graph similarity

Params obsp_keys:

list of

Parameters:

  • operator (default: 'intersection') – operator=’intersection’ -> kNN overlap, operator=’union’ -> number of edge occurrence for all embeddings

  • adata (AnnData)

  • obsp_keys (list)

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